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The funny thing is that I could not see the results over in my SQL*Plus session. That was strange. The shell scripts call code that commit the changes. I had to take a break to analyze this oddity. Then it came to me. My SQL*Plus work had not been committed in the first place. Therefore the test suite in a separate session could not see the uncommitted changes. Doh!
If you thought that one was bad, listen to this story. I made some changes to the database. Then I called a stored procedure to run some jobs to process that data. Worked good the first time. Then I repeated the process. Changed up some data, called the exact stored procedure. This time the changes I made did not take. WTF? I even did a commit but got wrong results. A lot of inspection got me the answer. The stored procedure was in a package that initialized some internal variables. This package initialization happens once per session. My jobs were being run by one SQL*Plus session. I needed to log out and log back in to get the package initialization to rerun and process the new data. Ouch. That's a tricky one.